covid-19: Add biobank export step

[boulund]

This step needs to link:

• Reference code (barcode)
• Biobank plate
• Biobank plate position
• Biobank tube ID

[boulund]

Got the following example from KI Biobank

Samplebarcode;Sampletype;Collectiondate;Region;ResearchSample;Mothersamplebarcode;PNR
*****;******;2020-05-02T13:49:25;Stockholm;Yes;L*******;

We have discussed including something like the following information:

• Sample type ("Svalg")
• Sampling date (the ServiceRequest creation date from Direkttest)
• Region
• Barcode for original sample (reference code)
• QR code for each biobank tube
• Biobank plate ID

[boulund]

I got the account details to the KI Biobank SFTP server where we will upload the data.

[boulund]

I think we have everything we need to start working in this issue now @chichackles. Let's make a plan for how this will be implemented and tested!

[boulund]

We also need to read the biobank consent from direkttest, there is an API endpoint available for grabbing that. I'm fairly sure the KNM API client does not support it at the moment, so we might have to add that to the client as well, since this API endpoint was not present when the KNM API client was created.

#196

[boulund]

Drafted some code to do this this weekend in branch cov-166-add-biobank-export

https://github.com/ctmrbio/claritylims/blob/cov-166-add-biobank-export/clarity-ext-scripts/clarity_ext_scripts/covid/export_to_ki_biobank.py