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Added biahub convert#178

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biahub-convert
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Added biahub convert#178
srivarra wants to merge 5 commits into
mainfrom
biahub-convert

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@srivarra srivarra linked an issue Oct 29, 2025 that may be closed by this pull request
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ieivanov commented Dec 8, 2025

This is much more code duplication than I expected. If needed, let's refactor concatenate such that we can reuse it here. In my mind, biahub convert should be more or less something like

from biahub.concatenate import concatenate

@click.command("convert")
...
def convert_cli(
    input_position_dirpaths: List[Path],
    output_dirpath: Path,
...
) -> None:

  concatenate(input_position_dirpaths, output_dirpath)

Signed-off-by: Sricharan Reddy Varra <sricharan.varra@biohub.org>
@srivarra srivarra marked this pull request as ready for review February 10, 2026 18:54
@srivarra srivarra requested review from ieivanov and removed request for ieivanov February 10, 2026 18:54
@srivarra srivarra marked this pull request as draft February 10, 2026 18:55
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Add biahub convert

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