Set scale for any coordinate transform

[ziw-liu]

Fix #278.

Position.set_scale now works for any level, like Position.set_transform.

[ieivanov]

This looks good to me, it's best if @talonchandler also takes a look before merging.

[ziw-liu]

Also @edyoshikun you asked for the organelle box dataset.

[edyoshikun]

The comments above are not a dealbreaker.

LGTM! Tested the CLI and the script after bumping my environment to 3.11

[edyoshikun]

@ziw-liu I just saw your comments. this all LGTM! thanks

[talonchandler]

Thanks for generalizing this @ziw-liu. I tested on a pyramid, and all is working as expected.

My only non-blocking suggestion is to consider renaming image to multiscale-level or similar. My understanding of the OME-Zarr spec is that they refer to the whole pyramid as an image, and they refer to each level of the pyramid as a multiscale-level. IMO this renaming would also make it easier to understand what this option is for.

[ziw-liu]

My only non-blocking suggestion is to consider renaming image to multiscale-level or similar

This argument name is consistent with iohub.ngff.ImageArray. Probably not the best type naming but that would be a breaking change.