Compute time scale for ndtiff datasets#316
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@srivarra could you please take this PR forward? The purpose is to include the correct time scale for NDTiff dataset, which is scraped from the acquisition metadata. We have a similar implementation for OME-Tiff datasets which was introduced here: #308. NDTiff datasets may not have perfectly uniform time sampling (say acquiring images at [0, 9.8, 10.2] seconds) so I introduced a linear fit to get the acquisition "rate". Frequently, we'll also skip acquiring a timepoint - for example if the autofocus has troubles engaging. In that case the next t_idx=3 will be skipped and t_idx will be written at ~40 seconds. My implementation may already work - please give it a try, I'll point you to a couple test datasets. |
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This dataset should be a good start: |
# Conflicts: # src/iohub/ndtiff.py
Signed-off-by: Sricharan Reddy Varra <sricharan.varra@biohub.org>
Signed-off-by: Sricharan Reddy Varra <sricharan.varra@biohub.org>
Signed-off-by: Sricharan Reddy Varra <sricharan.varra@biohub.org>
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