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This is not maintained. I recommend using the version from https://github.com/claresloggett/gvl_commandline_utilities

Galaxy-FUSE

Make galaxy history files available via a FUSE layer

This will create a read-only directory to view the files in your galaxy histories. At the moment this is implemented using symlinks to the actual data-set files

Requirements

  • pip install --user bioblend
  • pip install --user fusepy
  • mkdir galaxy-files
  • edit your galaxy/universe_wsgi.ini file, and add to the following to the app:main section expose_dataset_path = True

Then run:

./galaxy-fuse.py galaxy-files <your_api_key>

Limitations

  • Read-only access
  • Histories or data-sets with non-unique names will not work
  • No caching of history lookup (ie. stat() call), so can be slow-ish. Caching should be easy to add
  • History or data-set names containg a slash (/) are escaped to '%-'

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