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{bio}[foss/2020b] medaka v1.4.3 w/ Python 3.8.6 #13853

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boegel merged 10 commits intoeasybuilders:developfrom
sassy-crick:20210830134419_new_pr_medaka143
Sep 17, 2021
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{bio}[foss/2020b] medaka v1.4.3 w/ Python 3.8.6 #13853
boegel merged 10 commits intoeasybuilders:developfrom
sassy-crick:20210830134419_new_pr_medaka143

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@sassy-crick sassy-crick commented Aug 30, 2021

(created using eb --new-pr)

edit (by @boegel):

Downgraded networkx to v2.5 as that is already in the foss-2020b tool chain

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sassy-crick commented Aug 30, 2021

Depends on:

@sassy-crick sassy-crick marked this pull request as ready for review September 15, 2021 16:24
@sassy-crick sassy-crick changed the title medaka updated to latest version and foss-2020b, required by artic (PR# 13852), WIP medaka updated to latest version and foss-2020b, required by artic (PR# 13852) Sep 15, 2021
@sassy-crick sassy-crick changed the title medaka updated to latest version and foss-2020b, required by artic (PR# 13852) {bio}[foss/2020b] medaka v1.4.3 w/ Python 3.8.6 Sep 15, 2021
@boegel boegel added the update label Sep 16, 2021
@boegel boegel added this to the 4.x milestone Sep 16, 2021
@easybuilders easybuilders deleted a comment from boegelbot Sep 16, 2021
Comment thread easybuild/easyconfigs/m/medaka/medaka-1.4.3-TF-version-fix.patch Outdated
Comment thread easybuild/easyconfigs/m/medaka/medaka-1.4.3-foss-2020b.eb Outdated
Comment thread easybuild/easyconfigs/m/medaka/medaka-1.4.3-foss-2020b.eb Outdated
networkx version changed to 2.5 for consistency
@easybuilders easybuilders deleted a comment from boegelbot Sep 16, 2021
@easybuilders easybuilders deleted a comment from boegelbot Sep 16, 2021
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@easybuilders easybuilders deleted a comment from boegelbot Sep 16, 2021
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boegel commented Sep 16, 2021

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node2606.swalot.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/a2f2a8e984b9b96e33097e16097445b9 for a full test report.

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boegel commented Sep 16, 2021

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3617.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/8a8c8b44703db018c4e369376950339e for a full test report.

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boegel commented Sep 16, 2021

@boegelbot please test @ generoso

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@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=13853 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_13853 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 6905

Test results coming soon (I hope)...

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- notification for comment with ID 921161702 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegel commented Sep 16, 2021

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node2606.swalot.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/1c6124a6af1a0249430641e99d3dcd15 for a full test report.

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cnx2 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2660 v4 @ 2.00GHz (broadwell), Python 3.6.8
See https://gist.github.com/b6115d4b305cfcf6e1e61c519d3e2893 for a full test report.

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boegel commented Sep 17, 2021

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3511.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/f40ec15b0793bdf68d91f977de1e52f0 for a full test report.

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boegel commented Sep 17, 2021

Going in, thanks @sassy-crick!

@boegel boegel merged commit 46b093e into easybuilders:develop Sep 17, 2021
@sassy-crick sassy-crick deleted the 20210830134419_new_pr_medaka143 branch September 17, 2021 09:58
@boegel boegel modified the milestones: 4.x, next release (4.5.0?) Sep 17, 2021
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3 participants