add patch to fix broken (hanging) Mash binaries

[bedroge]

Fixes #14509 by reintroducing (an updated version of) the patches that were already used for version 2.1. I've also added sanity check commands for all Mash easyconfigs, as this would have spotted the issue.

[bedroge]

Just noticed that version 2.0 also needs a patch, it has the same issue (sanity check now hangs)...

[bedroge]

Solved that by using the patches from version 2.1, which also work fine for 2.0.

[bedroge]

Test report by @bedroge
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
pg-interactive.hpc.rug.nl - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 3.6.8
See https://gist.github.com/f14edd53333c2a76afe8897e7fb988b5 for a full test report.

[bedroge]

@boegelbot please test @ generoso

[boegelbot]

@bedroge: Request for testing this PR well received on login1

PR test command 'EB_PR=14511 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_14511 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 7443

Test results coming soon (I hope)...

Details

- notification for comment with ID 987790173 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[verdurin]

Test report by @verdurin
SUCCESS
Build succeeded for 5 out of 5 (4 easyconfigs in total)
easybuild-c7.novalocal - Linux centos linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/99629460fc8b2966be2967f8a3c149d4 for a full test report.

[verdurin]

Test report by @verdurin
SUCCESS
Build succeeded for 6 out of 6 (4 easyconfigs in total)
centos7.lan - Linux centos linux 7.9.2009, x86_64, Intel Core Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/8304007ca9739439bc70d9f84d20b32d for a full test report.

[boegelbot]

Test report by @boegelbot
FAILED
Build succeeded for 4 out of 32 (4 easyconfigs in total)
cns1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/09533c6cfd8e071fde02fc35319d7018 for a full test report.

[verdurin]

@bedroge seems like generoso is too new to build GCCcore/6.4.0?

[bedroge]

@bedroge seems like generoso is too new to build GCCcore/6.4.0?

Yes, looks like it:
#10950

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
node2613.swalot.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/c5b0cfb35a38a1de9d06466d0acd3257 for a full test report.

[boegel]

lgtm

[boegel]

Going in, thanks @bedroge!