{bio,lib}[GCCcore/14.2.0,foss/2025a] WhatsHap v2.6, python-isal v1.7.0

easybuild/easyconfigs/p/python-isal/python-isal-1.7.0-GCCcore-14.2.0.eb

@@ -0,0 +1,30 @@
+easyblock = 'PythonBundle'
+
+name = 'python-isal'
+version = '1.7.0'
+
+homepage = 'https://github.com/pycompression/python-isal'
+description = """Faster zlib and gzip compatible compression and decompression
+ by providing python bindings for the isa-l library.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '14.2.0'}
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('versioningit', '3.2.0'),
+]
+dependencies = [
+    ('Python', '3.13.1'),
+    ('ISA-L', '2.31.1'),
+]
+
+exts_list = [
+    ('isal', version, {
+        'sources': [SOURCE_TAR_GZ],
+        'preinstallopts': 'PYTHON_ISAL_LINK_DYNAMIC=true',
+        'checksums': ['9eb9457ed27fd0a8a7b403a5f4f9e6c8d1a44c2ca28ecd2f2bf3aed90b0a74bf'],
+    })
+]
+
+moduleclass = 'lib'

easybuild/easyconfigs/w/WhatsHap/WhatsHap-2.6-foss-2025a.eb

@@ -0,0 +1,50 @@
+easyblock = 'PythonBundle'
+
+name = 'WhatsHap'
+version = '2.6'
+
+homepage = 'https://whatshap.readthedocs.io'
+description = """WhatsHap is a software for phasing genomic variants using DNA
+sequencing reads, also called read-based phasing or haplotype assembly. It is
+especially suitable for long reads, but works also well with short reads."""
+
+toolchain = {'name': 'foss', 'version': '2025a'}
+
+builddependencies = [
+    ('hatchling', '1.27.0'),
+    ('Cython', '3.1.1'),
+    ('setuptools', '80.9.0'),
+]
+
+dependencies = [
+    ('Python', '3.13.1'),
+    ('Pysam', '0.23.3'),
+    ('networkx', '3.5'),
+    ('SciPy-bundle', '2025.06'),
+    ('Biopython', '1.85'),
+    ('Yasm', '1.3.0'),
+    ('pyfaidx', '0.9.0.3'),
+    ('python-isal', '1.7.0'),
+    ('zlib-ng', '2.2.4'),
+    ('PuLP', '3.3.0'),
+]
+
+
+exts_list = [
+    ('xopen', '2.0.2', {
+        'source_tmpl': SOURCE_PY3_WHL,
+        'checksums': ['74e7f7fb7e7f42bd843c798595fa5a52086d7d1bf3de0e8513c6615516431313'],
+    }),
+    ('whatshap', version, {
+        'checksums': ['d17f2840c51d11b2e40772805ecfb4bc611e4f0a0736c91bd5d66b694a6d116c'],
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/%(namelower)s'],
+    'dirs': [],
+}
+
+sanity_check_commands = ['%(namelower)s --help']
+
+moduleclass = 'bio'