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bugfix/InterProScan#25917

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nd996 wants to merge 3 commits intoeasybuilders:developfrom
nd996:bugfix/InterProScan
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bugfix/InterProScan#25917
nd996 wants to merge 3 commits intoeasybuilders:developfrom
nd996:bugfix/InterProScan

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@nd996 nd996 commented May 5, 2026

  • Fix regex not capturing the capital letters after INTERPROSCAN_ in var names e.g. INTERPROSCAN_ANTIFAM
  • Fix typo in signature.libary.release
  • Remove quotes around INTERPROSCAN_DATA_DIR and var_val, as they were showing up mid path e.g:
Error: File existence/permissions problem in trying to open HMM file "/opt/apps/eb/software/InterProScan_data/5.73-104.0"/ncbifam/"17.0"/ncbifam.hmm.
HMM file "/opt/apps/eb/software/InterProScan_data/5.73-104.0"/ncbifam/"17.0"/ncbifam.hmm not found (nor an .h3m binary of it)

@github-actions github-actions Bot added 2024a issues & PRs related to 2024a common toolchains 2025a issues & PRs related to 2025a common toolchains change labels May 5, 2026
@nd996 nd996 marked this pull request as ready for review May 5, 2026 13:40
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jfgrimm commented May 5, 2026

Test report by @jfgrimm
SUCCESS
Build succeeded for 2 out of 2 (total: 59 secs) (2 easyconfigs in total)
node031.viking2.yor.alces.network - Linux Rocky Linux 8.10, x86_64, AMD EPYC 7643 48-Core Processor, Python 3.6.8
See https://gist.github.com/jfgrimm/05d4e71bf0ca0384788c5fecc40145e9 for a full test report.

@jfgrimm jfgrimm added this to the next release (5.3.1?) milestone May 5, 2026
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jfgrimm commented May 5, 2026

@boegelbot: please test @ jsc-zen3

@jfgrimm jfgrimm added bug fix and removed change labels May 5, 2026
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@jfgrimm: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25917 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25917 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10357

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (total: 3 mins 59 secs) (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.25
See https://gist.github.com/boegelbot/c27e43a891a33d17e9243ebfde786e32 for a full test report.

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3 participants