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Homo_sapiens/NCBI/GRCh38/Annotation/Genes/genes.gtf 'gene_id' field refers to gene symbol, not Ensembl id

Status: Open.

#25 In ewels/AWS-iGenomes;

· tylergross97 opened on Jun 5, 2025

fatal error: Unable to locate credentials

Status: Open.

#24 In ewels/AWS-iGenomes;

· xiaoli-gg opened on Feb 28, 2025

Add T2T Reference

Status: Open.

#21 In ewels/AWS-iGenomes;

· dasnellings opened on May 29, 2024

Beagle reference set

Status: Open.

#20 In ewels/AWS-iGenomes;

· kubranarci opened on Jan 11, 2024

GENCODE release and assembly info

Status: Open.

#19 In ewels/AWS-iGenomes;

· aiqc opened on Jul 7, 2023

Add Canfam4 genome?

Status: Open.

#18 In ewels/AWS-iGenomes;

· KeyTals opened on Mar 3, 2023

Feature request: new rat reference mRatBN7.2

Status: Open.

#15 In ewels/AWS-iGenomes;

· klkeys opened on Feb 9, 2022

Add GRCh38 to nextflow.config

Status: Open.

#9 In ewels/AWS-iGenomes;

· benbfly opened on Feb 6, 2020

Pre-generated STAR indices are incompatible with newer versions of STAR

help wanted

Status: Open.

#6 In ewels/AWS-iGenomes;

· pansapiens opened on Oct 21, 2019

Add ENCODE blacklists

Status: Open.

#4 In ewels/AWS-iGenomes;

· drpatelh opened on Mar 4, 2019

Variation vcf missing from GRCh38

enhancement

Status: Open.

#3 In ewels/AWS-iGenomes;

· johanneskoester opened on Aug 28, 2018