CHANGELOG.md

qbic-pipelines/vcftomaf: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

v1.3.0dev

Added

• #36 - Swap pipeline tests to nf-test (@famosab)

Fixed

• #34 - Update vcf2maf configuration to adhere to hg38 as reference genome (@famosab)
• #35 - Template update to 3.2.0 (@famosab)
• #37 - Template update to 3.2.1 (@famosab)
• #38 - Template update to 3.5.1 (@famosab)
• #39 - Update all modules (@famosab)

Dependencies

Dependency.	Old version	New version
BCFtools	1.20	1.22
Gunzip	1.1	1.13
MultiQC	1.25.1	1.33
Picard	3.3.0	3.4.0
Tabix (HTSlib)	1.20	1.21

Deprecated

v1.2.0 - 15-01-2024 - Burgundy Piglet

Added

• #24 - Enable VEP annotation with vcf2maf module (@famosab)

Fixed

• #25 - Template update to 3.1.1 (@famosab)

Dependencies

Deprecated

v1.1.0 - 25-11-2024 - Amaranth Filly

Added

• #11 - Add metromap (@FriederikeHanssen)
• #18 - Add options to enable filtering by PASS via --filter, filtering was default in previous version (@famosab)

Fixed

• #16 - Template update to 3.0.2 (@famosab)
• #17 - Update all modules (@famosab)
• #20 - Update subworkflows (@famosab)

Dependencies

Deprecated

Thanks to @d4straub for reviews.

v1.0.0 - 13-03-2024 - Plum Puppy

Initial release of qbic-pipelines/vcftomaf, created with the nf-core template, written by @SusiJo and @FriederikeHanssen.