Enable VEP annotation with vcf2maf module#24
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Jan 15, 2025
* bump version to 1.2.0dev * change version in nf-core yml * Template Update to 3.1.1 (#25) * Template update for nf-core/tools version 3.1.1 * update Changelog * remove duplicate of workflow file * Apply suggestions from code review Co-authored-by: Mark Polster <58596435+mapo9@users.noreply.github.com> --------- Co-authored-by: Mark Polster <58596435+mapo9@users.noreply.github.com> * Enable VEP annotation with vcf2maf module (#24) * update vcf2maf module and vep test * update untar and enable vep again * remove .vscode * add test_vep to CI tests * final newline * add vep options back to usage docs * prepare release 1.2.0 (#27) * prepare next release * prettier * move VEP annotation to addition --------- Co-authored-by: Mark Polster <58596435+mapo9@users.noreply.github.com>
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).Closes #9