I have observed this issue multiple times on various linux systems (lastly tested on Ubuntu 14.04).
When processing even fairly small datasets (tested with TMT 6 and 10 plex) R crashes repeatedly with the following error message:
Error: C stack usage 53290724 is too close to the limit
Execution halted
The issue is only circumvented by setting the C stack size to quite large amounts, in the 10-plex case
(the default size is 8192).
Until now I was unable to pinpoint the source of this error.
I have observed this issue multiple times on various linux systems (lastly tested on Ubuntu 14.04).
When processing even fairly small datasets (tested with TMT 6 and 10 plex) R crashes repeatedly with the following error message:
The issue is only circumvented by setting the C stack size to quite large amounts, in the 10-plex case
ulimit -s 80000(the default size is 8192).
Until now I was unable to pinpoint the source of this error.