Fix shed-tools test -t workflow_tools.yml#155
Merged
mvdbeek merged 1 commit intogalaxyproject:masterfrom Feb 28, 2020
Merged
Conversation
The `tool_shed` URLs returned by Galaxy via `get_tool_panel()` don't have a protocol part, while the `tool_shed_url` field in YAML files generated by `workflow-to-tools` start with an `https://` . This resulted in testing 0 tools when `shed_tools` is invoked on such a YAML file.
mvdbeek
approved these changes
Feb 28, 2020
bgruening
approved these changes
Feb 28, 2020
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
The
tool_shedURLs returned by Galaxy viaget_tool_panel()don't have a protocol part, while thetool_shed_urlfield in YAML files generated byworkflow-to-toolsstart with anhttps://. This resulted in testing 0 tools whenshed_toolsis invoked on such a YAML file.