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Fix a few lint issues. #90

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Merged
jmchilton merged 3 commits into from
May 8, 2018
Merged

Fix a few lint issues. #90

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5a9d2a1
Fix some lint errors.
jmchilton May 8, 2018
dae24bd
ignore 501 from liniting
bgruening May 7, 2018
c281e65
Undo ignoring of E501.
jmchilton May 8, 2018
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10 changes: 5 additions & 5 deletions ephemeris/generate_tool_list_from_ga_workflow_files.py
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Original file line number Diff line number Diff line change
Expand Up @@ -58,7 +58,7 @@ def translate_workflow_dictionary_to_tool_list(tool_dictionary, panel_label):
tool_list = []
for tool in starting_tool_list:
sub_dic = {'name': tool['name'], 'owner': tool['owner'], 'revisions': [tool['changeset_revision']],
'tool_panel_section_label': panel_label, 'tool_shed_url': 'https://'+tool['tool_shed']}
'tool_panel_section_label': panel_label, 'tool_shed_url': 'https://' + tool['tool_shed']}
tool_list.append(sub_dic)
return tool_list

Expand All @@ -75,10 +75,10 @@ def reduce_tool_list(tool_list):
for tool in tool_list:
if current_tool is tool:
continue
if (tool["name"] == current_tool['name']
and tool['owner'] == current_tool['owner']
and tool['tool_panel_section_label'] == current_tool['tool_panel_section_label']
and tool['tool_shed_url'] == current_tool['tool_shed_url']):
if (tool["name"] == current_tool['name'] and
tool['owner'] == current_tool['owner'] and
tool['tool_panel_section_label'] == current_tool['tool_panel_section_label'] and
tool['tool_shed_url'] == current_tool['tool_shed_url']):
current_tool["revisions"].extend(tool["revisions"])
tool_list.remove(tool)
current_tool['revisions'] = list(set(current_tool['revisions']))
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2 changes: 1 addition & 1 deletion ephemeris/shed_tools.py
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Original file line number Diff line number Diff line change
Expand Up @@ -292,7 +292,7 @@ def _parser():
help="This installs tools in Galaxy from the Tool Shed."
"Use shed-tools install --help for more information",
parents=[common_arguments],
)
)
install_command_parser.set_defaults(
update_tools=False
)
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