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[19.09] Add PAF, GFA1 and odgi datatypes#9592

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bgruening merged 3 commits into
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nsoranzo:release_19.09_add_paf_gfa_datatypes
Apr 8, 2020
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[19.09] Add PAF, GFA1 and odgi datatypes#9592
bgruening merged 3 commits into
galaxyproject:release_19.09from
nsoranzo:release_19.09_add_paf_gfa_datatypes

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@nsoranzo nsoranzo commented Apr 8, 2020

Need these 3 datatypes for galaxyproject/tools-iuc#2955 and galaxyproject/tools-iuc#2956 , as part of the COVID-19 Biohackathon . Targeting 19.09 because UseGalaxy.eu is still on that release.

@nsoranzo nsoranzo added this to the 20.05 milestone Apr 8, 2020
@nsoranzo nsoranzo changed the title [19.09][WIP] Add PAF and GFA datatype [19.09][WIP] Add PAF and GFA datatypes Apr 8, 2020
@nsoranzo nsoranzo changed the title [19.09][WIP] Add PAF and GFA datatypes [19.09][WIP] Add PAF and GFA1 datatypes Apr 8, 2020
@nsoranzo nsoranzo force-pushed the release_19.09_add_paf_gfa_datatypes branch from a15ab67 to d79ae91 Compare April 8, 2020 01:40
@nsoranzo nsoranzo changed the title [19.09][WIP] Add PAF and GFA1 datatypes [19.09] Add PAF and GFA1 datatypes Apr 8, 2020
@nsoranzo nsoranzo mentioned this pull request Apr 8, 2020
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nsoranzo commented Apr 8, 2020

Green!

@nsoranzo nsoranzo changed the title [19.09] Add PAF and GFA1 datatypes [19.09] Add PAF, GFA1 and odgi datatypes Apr 8, 2020
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mvdbeek commented Apr 8, 2020

I am a little disappointed in having to do this. We should have a mechanism for this. Maybe something likeformat="cool_new_format" format_fallback="txt"

@bgruening bgruening merged commit 7adb2a3 into galaxyproject:release_19.09 Apr 8, 2020
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Merci.

@nsoranzo nsoranzo deleted the release_19.09_add_paf_gfa_datatypes branch April 8, 2020 15:22
@galaxyproject galaxyproject deleted a comment from galaxybot Apr 8, 2020
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3 participants