Move most tests to Python 3.7. Updates for release

.travis.yml

@@ -9,22 +9,22 @@ matrix:
   include:
     - python: 2.7
       env: TOX_ENV=py27-lint
+    - python: 3.7
+      env: TOX_ENV=py37-lint_readme
+    - python: 3.7
+      env: TOX_ENV=py37-lint_docs
+    - python: 3.7
+      env: TOX_ENV=py37-lint_docstrings
+    - python: 3.7
+      env: TOX_ENV=py37-lint
+    - python: 3.7
+      env: TOX_ENV=py37-quick
     - python: 2.7
-      env: TOX_ENV=py27-lint-readme
-    - python: 2.7
-      env: TOX_ENV=py27-lint-docs
-    - python: 2.7
-      env: TOX_ENV=py27-lint-docstrings
-    - python: 3.6
-      env: TOX_ENV=py36-lint
-    - python: 3.6
-      env: TOX_ENV=py36-quick
-    - python: 2.7
-      env: TOX_ENV=py27
-    - python: 3.6
-      env: TOX_ENV=py36
+      env: TOX_ENV=py27-unit
+    - python: 3.7
+      env: TOX_ENV=py37-unit
   allow_failures:
-    - env: TOX_ENV=py27-lint-docstrings
+    - env: TOX_ENV=py37-lint_docstrings
 
 install:
   - pip install tox coveralls

CONTRIBUTING.rst

@@ -106,7 +106,7 @@ Before you submit a pull request, check that it meets these guidelines:
 
 1. If the pull request adds functionality, the docs should be updated. Put
    your new functionality into a function with a docstring.
-2. The pull request should work for Python 2.7 and 3.4. Check
+2. The pull request should work for Python 2.7 and 3.7. Check
    https://travis-ci.org/galaxyproject/planemo/pull_requests
    and make sure that the tests pass for all supported Python versions.
 
@@ -115,23 +115,23 @@ Tips
 
 To run a subset of tests::
 
-    % make tox ENV=py27 ARGS='--tests tests/test_shed_upload.py'
+    % make tox ENV=py37-unit ARGS='--tests tests/test_shed_upload.py'
 
-This will use Tox_ to run the specified tests using Python 2.7. ``ENV`` here
+This will use Tox_ to run the specified tests using Python 3.7. ``ENV`` here
 can be used to specify different Python version (e.g. ``py27`` and
-``py34``). Python 3.4 is a work in progress. 
+``py37``).
 
 Even more granularity is also possible by specifying specific test methods.::
 
-    make tox ENV=py27 ARGS='--tests tests/test_shed_upload.py:ShedUploadTestCase.test_tar_from_git'
+    make tox ENV=py37-unit ARGS='--tests tests/test_shed_upload.py:ShedUploadTestCase.test_tar_from_git'
 
 
 ``tox`` can be used to run tests directly also (use ``. .venv/bin/activate``
 to ensure it is on your ``PATH``).
 
 ::
 
-    tox -e py27 -- --tests tests/test_shed_upload.py
+    tox -e py37-unit -- --tests tests/test_shed_upload.py
 
 Tox_ itself is configured to wrap nose_. One can skip Tox_ and run
 ``nosetests`` directly.
@@ -150,18 +150,18 @@ testing environment. Planemo defines the following environments:
 ``py27-lint``
     Lint the planemo code using Python 2.7.
 
-``py34-lint``
+``py37-lint``
     Lint the planemo code using Python 3.4 (also ensures valid Python 3
     syntax).
 
-``py27-lint-readme``
+``py37-lint_readme``
     Lint the README reStructuredText.
 
-``py27``
+``py27-unit``
     Run planemo tests in Python 2.7.
 
-``py34``
-    Run planemo tests in Python 3.4 (not currently working).
+``py37-unit``
+    Run planemo tests in Python 3.7.
 
 
 Pre-commit Hooks

Makefile

@@ -70,7 +70,7 @@ flake8: ## check style using flake8 for current Python (faster than lint)
 	$(IN_VENV) flake8 $(SOURCE_DIR)  $(TEST_DIR)
 
 lint: ## check style using tox and flake8 for Python 2 and Python 3
-	$(IN_VENV) tox -e py27-lint && tox -e py34-lint
+	$(IN_VENV) tox -e py27-lint && tox -e py37-lint
 
 lint-readme: ## check README formatting for PyPI
 	$(IN_VENV) python setup.py check -r -s

docs/planemo.bioconda_scripts.rst

@@ -8,15 +8,15 @@ planemo.bioconda\_scripts.bioconductor\_skeleton module
 -------------------------------------------------------
 
 .. automodule:: planemo.bioconda_scripts.bioconductor_skeleton
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 
 Module contents
 ---------------
 
 .. automodule:: planemo.bioconda_scripts
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance: