Update all IUC tools on test.galaxyproject.org

[mvdbeek]

No description provided.

[mvdbeek]

@galaxybot deploy this

[mvdbeek]

@galaxybot deploy this

[mvdbeek]

Arg, this fails for revisions that appear both in toolshed and testtoolshed entries.

[mvdbeek]

Hmm, with extended debugging I see this is the state for one of the failing repositories:

[{'id': '1dc8dee747cb1130',
  'tool_shed': 'toolshed.g2.bx.psu.edu',
  'name': 'gemini_roh',
  'owner': 'iuc',
  'installed_changeset_revision': 'd65ca2fa673b',
  'changeset_revision': '345d41f3f574',
  'ctx_rev': '7',
  'includes_datatypes': False,
  'tool_shed_status': {'latest_installable_revision': 'True',
   'repository_deprecated': 'False',
   'revision_update': 'False',
   'revision_upgrade': 'False'},
  'deleted': False,
  'uninstalled': False,
  'dist_to_shed': False,
  'status': 'Installed',
  'error_message': '',
  'description': 'Wrapper for the gemini tool suite: GEMINI roh',
  'url': '/api/tool_shed_repositories/1dc8dee747cb1130'}]

So it looks like the repo was actually installed correctly in the first call, but uwsgi closed the connection before the response was sent. I guess we need to also handle the repository state being terminal during the exception handling.

[mvdbeek]

@galaxybot deploy this

[mvdbeek]

@galaxybot deploy this

[mvdbeek]

@galaxybot deploy this

[mvdbeek]

@galaxybot deploy this

[martenson]

@mvdbeek you ended up using your fork for ephemeris, what was the difference?

[mvdbeek]

Need to include terminal states in possible states to check after a request timeout -- galaxyproject/ephemeris#161