Search results

Variants reported in haplogroups.txt not present in variants.annotated.txt

Status: Open.

#35 In genepi/mtdna-server-2;

· kelly-chen6 opened on Apr 7, 2026

[possible bug] calling actual reference variant as high heteroplasmic

Status: Open.

#34 In genepi/mtdna-server-2;

· wwoskie opened on Dec 16, 2025

Some variants are not being reported (including a known pathogenic one)

Status: Open.

#32 In genepi/mtdna-server-2;

· amhaaning opened on Jul 11, 2025

BUG: Reporting single variant for multiallelic variants

Status: Open.

#30 In genepi/mtdna-server-2;

· amhaaning opened on Apr 30, 2025

Process MTDNA_SERVER_2:QUALITY_CONTROL terminated with an error exit status (137)

Status: Open.

#29 In genepi/mtdna-server-2;

· PawelWojciechowski opened on Apr 15, 2025

Low mean coverage setting

Status: Open.

#28 In genepi/mtdna-server-2;

· jannavb opened on Apr 8, 2025

Is it possible to keep the merged, filtered VCF?

Status: Open.

#27 In genepi/mtdna-server-2;

· amhaaning opened on Mar 13, 2025

ERROR ~ Unable to parse config file: '/media/manish/Data/Jyoti_Mridha_AIC/Program/mtdna-server-2-2.1.14/nextflow.config'

Status: Open.

#26 In genepi/mtdna-server-2;

· Jyoti-Mridha opened on Sep 18, 2024

Feature request: publishDir, annotation , etc...

Status: Open.

#25 In genepi/mtdna-server-2;

· lindenb opened on Jun 10, 2024