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1. immune-classifier immune-classifier Public

   Investigation of immune cell classification performance of deep-learning models across different microscopy imaging domains.

   Python

2. bionmf bionmf Public

   NMF solver designed for identifying metagene programs in bioinformatics, adopted from Brunet et al. (available on PyPi)

   Python

3. peak-quant peak-quant Public

   Quantify peaks in BED format to a sparse count matrix for downstream analysis, such as DEseq2.

   Python

4. variant-simulator variant-simulator Public

   Simulation of probability distribution of minor allele frequencies of single-nucleotide polymorphisms.

   Python

5. ecotyper-py ecotyper-py Public

   Unofficial Python implementation of EcoTyper (R) for tumour-microenvironment classification in single-cell and bulk RNA-seq, incorporation with AnnData.

   Python

6. sleep-stage-classifier sleep-stage-classifier Public

   CNN-RNN unified architecture written in Tensorflow for classifying sleep stages from EEG and ECG biosignals.

   C++ 6 1