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2 parents 9d29968 + f32c3a5 commit af5041dCopy full SHA for af5041d
1 file changed
run-docker.sh
@@ -272,11 +272,12 @@ if [ -z "$FINN_SINGULARITY" ];then
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else
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SINGULARITY_BASE="singularity exec"
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# Replace command options for Singularity
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- SINGULARITY_EXEC="${DOCKER_EXEC//"-e "/"--env "}"
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- SINGULARITY_EXEC="${SINGULARITY_EXEC//"-v "/"-B "}"
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- SINGULARITY_EXEC="${SINGULARITY_EXEC//"-w "/"--pwd "}"
+ SINGULARITY_EXEC="${DOCKER_EXEC//-e /--env }"
+ SINGULARITY_EXEC="${SINGULARITY_EXEC//-v /-B }"
+ SINGULARITY_EXEC="${SINGULARITY_EXEC//-w /--pwd }"
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CMD_TO_RUN="$SINGULARITY_BASE $SINGULARITY_EXEC $FINN_SINGULARITY /usr/local/bin/finn_entrypoint.sh $DOCKER_CMD"
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gecho "FINN_SINGULARITY is set, launching Singularity container instead of Docker"
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fi
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+echo $CMD_TO_RUN
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$CMD_TO_RUN
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