Table of to-do's | To-do| Reason | |--- |--- | | Print reaction flux as optional output during draft_model, fba and sgk| Useful for downstream analysis | | Change blast+ toMMseqs2 to increase speed and accuracy of ortholog finding | https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-07132-6 | | Substitute prodigal to pyrodigal https://github.com/althonos/pyrodigal | This is faster than prodigal at finding ORFs | | Print reaction table | For end user ease | | x | x |
Table of to-do's