INstruct

RDF Converter for INstruct

Downloading data

Download data from the following web site.

http://instruct.yulab.org/downloads.html

Store the source file(tsv) to be converted in the following directory.

data_i

Cinfiguration

Edit the following definition file.

tsv2rdf_instruct.json

{
	"organism":{
		"sapiens":{
			"all":"sapiens.sin",
			"annotations":"direct_homology.txt"
		},
		"elegans":{
			"all":"elegans.sin"
		},
		"melanogaster":{
			"all":"melanogaster.sin"
		},
		"musculus":{
			"all":"musculus.sin"
		},
		"pombe":{
			"all":"pombe.sin"
		},
		"thaliana":{
			"all":"thaliana.sin"
		}
	},
	"template":{
		"prefix":"templ_instruct.ttl.prefix",
		"body":"templ_instruct.ttl",
		"evidence":"templ_instruct.ttl.evi"
	},
	"output_file":"instruct_sample.ttl",
	"data_path":"data_i"

}

Usage

$ ./tsv2rdf_instruct.sh