Fix path traversal, resource leak, and race condition in module system#6929

Merged

bentsherman merged 87 commits intomasterfrom

fix/module-system-code-issues

Mar 17, 2026

Commits on Nov 17, 2025

Add Nextflow Development Constitution

pditommaso
and
claude
committed

Commits on Nov 24, 2025

Module adr v1
pditommaso
committed

Commits on Nov 25, 2025

Module adr v2
pditommaso
committed

Commits on Dec 11, 2025

Commits on Dec 15, 2025

Commits on Jan 6, 2026

Commits on Jan 7, 2026

Commits on Jan 15, 2026

Commits on Jan 22, 2026

Simplify module system requires definition [ci skip]
pditommaso
committed

Commits on Jan 23, 2026

Commits on Jan 25, 2026

Resolve some conflicts with nextflow-io/schemas#10
bentsherman
committed

Commits on Jan 26, 2026

Update adr/20251114-module-system.md [ci skip]

pditommaso
and
bentsherman
authored

Commits on Jan 28, 2026

Extract module parameters to separate spec [ci skip]

pditommaso
and
claude
committed

Commits on Feb 10, 2026

Merge branch 'master' into 251117-module-system
jorgee
authored

Commits on Feb 25, 2026

Merge branch 'master' into 251117-module-system
jorgee
authored

Commits on Mar 3, 2026

docs: clarify path name for staged task inputs (#6869)

authored and
pditommaso
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Add devcontainer (#6792)

authored and
pditommaso
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Fix vertical alignment in timeline report (#6794)

PeterKneale
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pditommaso
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Ensure main script is first in the WorkflowRun lineage record (#6845)

jorgee
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pditommaso
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Add whitespace rules to .editorconfig (#5606)

ewels
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pditommaso
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docs: Update your first script to use outputs (#6500)

christopher-hakkaart
authored and
pditommaso
committed
Update AWS CLI install docs to bypass conda install TOS prompt (#6685)

rzelle-lallemand
authored and
pditommaso
committed
Clarify onError and onComplete handler descriptions (#6709) [ci fast]

colinbrislawn
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pditommaso
committed
Use explicit memory units for LSF executor (#5217)

bentsherman
authored and
pditommaso
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Treat LSF job status UNKWN as HOLD (#5756)

bentsherman
authored and
pditommaso
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Allow boolean params to implicitly default to false (#6764)

bentsherman
authored and
pditommaso
committed
Sched core implementation alpha1 (#6242)

committed
Revert version 26.01.1-edge
pditommaso
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Bump copyright 2026
pditommaso
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Handle Azure Batch ActiveJobAndScheduleQuotaReached with retry (#6874)

committed
[ci fast] Add agent output mode (NXF_AGENT_MODE)

edmundmiller
authored and
pditommaso
committed
Bump nf-amazon@3.7.1
pditommaso
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Bump nf-azure@1.22.0
pditommaso
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Bump nf-google@1.26.1
pditommaso
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Bump nf-tower@1.21.0
pditommaso
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Bump nf-seqera@0.12.0
pditommaso
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Bump nf-tower@1.21.0 nextflowVersion
pditommaso
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Bump nf-seqera@0.12.0 nextflowVersion and README
pditommaso
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Fix AgentLogObserver println clash with Groovy GDK method
pditommaso
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Add Summary section to plugin README files

pditommaso
and
claude
committed
[release] [ci fast] Nextflow version 26.02.0-edge
pditommaso
committed
Fix docs [ci skip]
pditommaso
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Add logStreamId to Tower task record (#6877)

pditommaso
and
claude
committed
Don't include container in task trace when containers are not enabled (#6824)

bentsherman
authored and
pditommaso
committed
Propagate errors from workflow outputs (#6876)

bentsherman
authored and
pditommaso
committed
Fix type detection of CLI params in v2 config parser (#6765)

bentsherman
authored and
pditommaso
committed
Add NVMe disk allocation and diskMountPath support (#6879) [ci fast]

pditommaso
and
claude
committed

Commits on Mar 4, 2026

Merge remote-tracking branch 'origin/master' into 251117-module-system [ci skip]
jorgee
committed

Commits on Mar 10, 2026

Commits on Mar 17, 2026

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