The blacklists used by the pipeline seem to be an old version, with fewer entries than the ones we can find in the newly updated versions here: https://sites.google.com/site/anshulkundaje/projects/blacklists
For instance, the GRcm38 provided with the 1.2.2 chipseq version appears to have 164 entries, while the mm10 one in the followig link https://github.com/Boyle-Lab/Blacklist/tree/master/lists (version 2) has 3435 entries.
For human there's even a newer update version3, it would be great if the most up to date versions would be provided with the pipelines
Would it be possible to update them please? @jose Espinosa-Carrasco
The blacklists used by the pipeline seem to be an old version, with fewer entries than the ones we can find in the newly updated versions here: https://sites.google.com/site/anshulkundaje/projects/blacklists
For instance, the GRcm38 provided with the 1.2.2 chipseq version appears to have 164 entries, while the mm10 one in the followig link https://github.com/Boyle-Lab/Blacklist/tree/master/lists (version 2) has 3435 entries.
For human there's even a newer update version3, it would be great if the most up to date versions would be provided with the pipelines
Would it be possible to update them please? @jose Espinosa-Carrasco