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FIX: Strict syntax for kaust (#1077)
Co-authored-by: Husen M. Umer <husensofteng@users.noreply.github.com>
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Lines changed: 2 additions & 2 deletions

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conf/kaust.config

Lines changed: 2 additions & 2 deletions
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@@ -8,7 +8,7 @@ params {
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}
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// Load genome resources and assets hosted by the Bioinformatics team on IBEX cluster
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includeConfig 'https://raw.githubusercontent.com/bioinfo-kaust/references/refs/heads/main/configs/genomes.config'
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includeConfig (!System.getenv('NXF_OFFLINE') ? "https://raw.githubusercontent.com/bioinfo-kaust/references/refs/heads/main/configs/genomes.config" : "/dev/null")
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singularity {
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enabled = true
@@ -17,7 +17,7 @@ singularity {
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// Use existing images from the centralized library, if available
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libraryDir = "/biocorelab/BIX/resources/singularity/images/"
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// Download images that are missing from the library to user space
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cacheDir = "/ibex/user/$USER/.singularity/nf_images/"
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cacheDir = "/ibex/user/${System.getenv('USER')}/.singularity/nf_images/"
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}
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process {

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