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99
1010// Load genome resources and assets hosted by the Bioinformatics team on IBEX cluster
11- includeConfig ' https://raw.githubusercontent.com/bioinfo-kaust/references/refs/heads/main/configs/genomes.config'
11+ includeConfig (!System.getenv('NXF_OFFLINE') ? " https://raw.githubusercontent.com/bioinfo-kaust/references/refs/heads/main/configs/genomes.config" : "/dev/null")
1212
1313singularity {
1414 enabled = true
@@ -17,7 +17,7 @@ singularity {
1717 // Use existing images from the centralized library, if available
1818 libraryDir = "/biocorelab/BIX/resources/singularity/images/"
1919 // Download images that are missing from the library to user space
20- cacheDir = "/ibex/user/$USER/.singularity/nf_images/"
20+ cacheDir = "/ibex/user/${System.getenv(' USER')} /.singularity/nf_images/"
2121}
2222
2323process {
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