Skip to content

FIX: Strict syntax for bi.config #1066

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
apeltzer merged 3 commits into from
Apr 14, 2026
Merged

FIX: Strict syntax for bi.config #1066

Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
ec0ca0d
fix: fix strict syntax in bi.config
maxulysse Apr 7, 2026
73d7416
Merge branch 'master' into fix_strict_syntax_BI
maxulysse Apr 7, 2026
9c89b81
Merge branch 'master' into fix_strict_syntax_BI
maxulysse Apr 14, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 4 additions & 6 deletions conf/bi.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,11 +7,9 @@ params {
config_profile_description = 'Boehringer Ingelheim internal profile provided by nf-core/configs.'
config_profile_contact = 'Alexander Peltzer (@apeltzer)'
config_profile_url = 'https://www.boehringer-ingelheim.com/'
bi_globalConfig = System.getenv('NXF_GLOBAL_CONFIG') ?:
System.err.println("WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile.")
}

params.bi_globalConfig = System.getenv('NXF_GLOBAL_CONFIG')
if (params.bi_globalConfig == null) {
System.err.println("WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile.")
} else {
includeConfig params.bi_globalConfig
}
// Include the global config if set
includeConfig(params.bi_globalConfig ?: '/dev/null')
Loading
⚡