lugh_scrna.config

[chopraamhk]

config file to run single-cell/single-nuclei RNAseq using nf-core/scrnaseq

---

name: lugh_scrna.config
about: config file to run single-cell analysis using nfcore pipeline

Please follow these steps before submitting your PR:
Steps for adding a new config profile:

• Add your custom config file to the conf/ directory
• Add your documentation file to the docs/ directory
• Add your custom profile to the nfcore_custom.config file in the top-level directory
• Add your profile name to the profile: scope in .github/workflows/main.yml
• OPTIONAL: Add your custom profile path and GitHub user name to .github/CODEOWNERS (**/<custom-profile>** @<github-username>)

[pontus]

This seems to be intended as a pipeline configuration for a site that already has a institutional configuration.

Such configs is not expected to be offered this way, rather the pipeline-specific bits should go in a relevant place (e.g. conf/pipeline/scrnaseq/lugh.config) with a suitable include in pipeline/scrnaseq.conf - e.g.

   lugh {
        includeConfig "${params.custom_config_base}/conf/pipeline/scrnaseq/lugh.config"
    }