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remove the old E5 queue and replace it with the new Cascade one#898

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l-modolo merged 4 commits intonf-core:masterfrom
l-modolo:master
May 6, 2025
Merged

remove the old E5 queue and replace it with the new Cascade one#898
l-modolo merged 4 commits intonf-core:masterfrom
l-modolo:master

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@l-modolo
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@l-modolo l-modolo commented May 5, 2025


name: Update existing PSMN config
about: we changed the queue system

Please follow these steps before submitting your PR:

  • If your PR is a work in progress, include [WIP] in its title
  • Your PR targets the master branch
  • You've included links to relevant issues, if any

Steps for adding a new config profile:

  • Add your custom config file to the conf/ directory
  • Add your documentation file to the docs/ directory
  • Add your custom profile to the nfcore_custom.config file in the top-level directory
  • Add your custom profile to the README.md file in the top-level directory
  • Add your profile name to the profile: scope in .github/workflows/main.yml
  • OPTIONAL: Add your custom profile path and GitHub user name to .github/CODEOWNERS (**/<custom-profile>** @<github-username>)

The PSMN deprecated the E5 queue and we now have a new queue called Cascade

@pontus
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pontus commented May 5, 2025

Have these been tested? I'm fairly certain the space there will break stuff.

@l-modolo
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l-modolo commented May 5, 2025

thank you for spotting the spaces typo

@jfy133
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jfy133 commented May 6, 2025

You can merge @l-modolo

@l-modolo l-modolo merged commit 1eeb9c9 into nf-core:master May 6, 2025
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3 participants