Closed
Conversation
pontus
reviewed
Dec 17, 2025
Comment on lines
+14
to
+20
| // using singularity platform | ||
| singularity { | ||
| enabled = true | ||
| autoMounts = true | ||
| cacheDir = '' | ||
| pullTimeout = '*h' | ||
| } |
Collaborator
There was a problem hiding this comment.
While I typically think you should use singularity/apptainer, having this in the pipeline configuration seems odd and likely to break stuff?
I don't think I understand the intention here.
8 tasks
Member
|
These changes are already set in the core nf-core template (minus the pull timeout) but that should be updated on a per-cluster/infra basis, not globally. I will close this, but please shout onthe nf-core Slack @iamamofa if you need more help |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
name: New Config
about: A new cluster config
Please follow these steps before submitting your PR:
[WIP]in its titlemasterbranchSteps for adding a new config profile:
conf/directorydocs/directorynfcore_custom.configfile in the top-level directoryprofile:scope in.github/workflows/main.yml.github/CODEOWNERS(**/<custom-profile>** @<github-username>)