Merge branch 'dev' into dsl2-new_test_configs

Author: jfy133

conf/test_modern.config

@@ -19,25 +19,25 @@ process {
 }
 
 params {
-    config_profile_name             = 'Test modern profile'
-    config_profile_description      = 'Minimal test dataset to check pipeline function'
+    config_profile_name        = 'Test modern profile'
+    config_profile_description = 'Minimal test dataset to check pipeline function'
 
     // Input data
-    input                           = params.pipelines_testdata_base_path + 'eager/testdata/Mammoth/mammooth_design_bam_v3.tsv'
+    input                      = params.pipelines_testdata_base_path + 'eager/testdata/Mammoth/mammooth_design_bam_v3.tsv'
 
     // Genome references
-    fasta                           = params.pipelines_testdata_base_path + 'eager/reference/Mammoth/Mammoth_MT_Krause.fasta'
+    fasta                      = params.pipelines_testdata_base_path + 'eager/reference/Mammoth/Mammoth_MT_Krause.fasta'
 
 
     // Preprocessing
-    sequencing_qc_tool              = 'falco'
-    convert_inputbam                = false
+    sequencing_qc_tool         = 'falco'
+    convert_inputbam           = false
 
     // Mapping
-    mapping_tool                    = 'bwamem'
+    mapping_tool               = 'bwamem'
 
     // Genotyping
-    run_genotyping                  = true
-    genotyping_source               = 'raw'
-    genotyping_tool                 = 'hc'
+    run_genotyping             = true
+    genotyping_source          = 'raw'
+    genotyping_tool            = 'hc'
 }