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Update snapshot
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‎tests/test_microbial.nf.test.snap‎

Lines changed: 38 additions & 36 deletions
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@@ -145,6 +145,7 @@
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"JK2782_JK2782_TGGCCGATCAACGA_Mammoth_MT_Krause_metagenomics_fastq_unmapped_other.krakenuniq.report.txt",
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"JK2782_JK2782_TGGCCGATCAACGA_hs37d5_chr21-MT_metagenomics_fastq_unmapped_other.krakenuniq.report.txt",
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"bcftools_stats_variant_depths.txt",
@@ -186,12 +187,13 @@
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"qualimap_coverage_histogram.txt",
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"qualimap_gc_content.txt",
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"qualimap_genome_fraction.txt",
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"samtools-flagstat-dp_Percentage_of_total.txt",
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"samtools-flagstat-dp_Read_counts.txt",
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"samtools-flagstat-pct-table.txt",
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"samtools-flagstat-table.txt",
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"threeprime_misinc_plot.txt",
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"bcftools_stats_vqc_Count_SNP.pdf",
@@ -210,7 +212,6 @@
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"fastp_filtered_reads_plot-cnt.pdf",
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"fastp_filtered_reads_plot-pct.pdf",
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"fiveprime_misinc_plot.pdf",
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"general_stats_table.pdf",
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"length-distribution-Forward.pdf",
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"length-distribution-Reverse.pdf",
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"mapdamage-fiveprime_misinc_plot.pdf",
@@ -221,12 +222,13 @@
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"qualimap_coverage_histogram.pdf",
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"qualimap_gc_content.pdf",
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"qualimap_genome_fraction.pdf",
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"samtools-flagstat-dp_Percentage_of_total.pdf",
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"samtools-flagstat-dp_Read_counts.pdf",
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"samtools-flagstat-pct-table.pdf",
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"threeprime_misinc_plot.pdf",
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"bcftools_stats_variant_depths.png",
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"bcftools_stats_vqc_Count_SNP.png",
@@ -245,7 +247,6 @@
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"fastp_filtered_reads_plot-cnt.png",
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"fastp_filtered_reads_plot-pct.png",
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"fiveprime_misinc_plot.png",
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"general_stats_table.png",
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"length-distribution-Forward.png",
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"length-distribution-Reverse.png",
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"mapdamage-fiveprime_misinc_plot.png",
@@ -256,12 +257,13 @@
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"qualimap_coverage_histogram.png",
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"qualimap_gc_content.png",
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"qualimap_genome_fraction.png",
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"samtools-flagstat-dp_Percentage_of_total.png",
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"samtools-flagstat-dp_Read_counts.png",
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"samtools-flagstat-pct-table.png",
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"samtools-flagstat-table.png",
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"threeprime_misinc_plot.png",
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"bcftools-stats-subtypes-cnt.svg",
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"bcftools_stats_indel-lengths.svg",
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"bcftools_stats_vqc_Count_SNP.svg",
@@ -280,7 +282,6 @@
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"fiveprime_misinc_plot.svg",
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"length-distribution-Reverse.svg",
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"mapdamage-fiveprime_misinc_plot.svg",
@@ -291,8 +292,8 @@
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"qualimap_coverage_histogram.svg",
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"qualimap_gc_content.svg",
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"qualimap_genome_fraction.svg",
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"samtools-flagstat-dp_Percentage_of_total.svg",
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"samtools-flagstat-dp_Read_counts.svg",
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"samtools-flagstat-pct-table.svg",
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"samtools-flagstat-table.svg",
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"threeprime_misinc_plot.svg",
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"multiqc_report.html",
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"JK2782_JK2782_TGGCCGATCAACGA_L1_data.txt",
@@ -313,9 +314,9 @@
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"timestamp": "2025-06-20T11:36:34.825464"
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"timestamp": "2025-09-16T13:00:10.310232"
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"read_filtering": {
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"content": [
@@ -443,6 +444,7 @@
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@@ -484,12 +486,13 @@
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"bcftools_stats_variant_depths.pdf",
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@@ -508,7 +511,6 @@
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"mapdamage-fiveprime_misinc_plot.pdf",
@@ -519,12 +521,13 @@
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@@ -543,7 +546,6 @@
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@@ -554,12 +556,13 @@
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@@ -578,7 +581,6 @@
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@@ -589,17 +591,17 @@
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@@ -637,9 +639,7 @@
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