Merge pull request #559 from nf-core/TCLamnidis-patch-1

Fixed header of nuclear_contamination.txt

Author: jfy133

CHANGELOG.md

@@ -56,6 +56,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 * [#504](https://github.com/nf-core/eager/issues/504) - Removed uninformative sexdeterrmine-snps plot from MultiQC report.
 * Nuclear contamination is now reported with the correct library names.
 * Merged all tutorials and FAQs into `usage.md` for display on nf-co.re
+* Corrected header of nuclear contamination table (`nuclear_contamination.txt`).
 
 ### `Dependencies`
 

bin/print_x_contamination.py

@@ -25,7 +25,7 @@ def make_float(x):
 Input_files=sys.argv[1:]
 
 output = open("nuclear_contamination.txt", 'w')
-print ("Individual", "Method1_MOM_estimate", "Method1_MOM_SE", "Method1_ML_estimate", "Method1_ML_SE", "Method2_MOM_estimate", "Method2_MOM_SE", "Method2_ML_estimate", "Method2_ML_SE", sep="\t", file=output)
+print ("Individual", "Num_SNPs", "Method1_MOM_estimate", "Method1_MOM_SE", "Method1_ML_estimate", "Method1_ML_SE", "Method2_MOM_estimate", "Method2_MOM_SE", "Method2_ML_estimate", "Method2_ML_SE", sep="\t", file=output)
 for fn in Input_files:
     ## For each file, reset the values to "N/A" so they don't carry over from last file.
     mom1, err_mom1= "N/A","N/A"