Is your feature request related to a problem? Please describe.
EAGER1 allowed displaying pre- and post-mapping quality filtering number of reads in reporttable.
For this to work we would need to run samtools flagstat again but after the filtering above.
Describe the solution you'd like
Basically like pre-/post-AdapterRemoval FASTQC. And then a similar naming scheme of the output files for MultiQC reporting and displaying.
Is your feature request related to a problem? Please describe.
EAGER1 allowed displaying pre- and post-mapping quality filtering number of reads in reporttable.
For this to work we would need to run
samtools flagstatagain but after the filtering above.Describe the solution you'd like
Basically like pre-/post-AdapterRemoval FASTQC. And then a similar naming scheme of the output files for MultiQC reporting and displaying.