The latest version of AdapterRemoval now has a new flag related to issues identified with erroneous trimming of 5 prime ends leading to true PCR duplicates not being removed.
We need to
a) bump the AR version in the environment
b) add the --preserve5p flag to EAGER2 options
The latest version of AdapterRemoval now has a new flag related to issues identified with erroneous trimming of 5 prime ends leading to true PCR duplicates not being removed.
We need to
a) bump the AR version in the environment
b) add the
--preserve5pflag to EAGER2 options