Is your feature request related to a problem? Please describe.
While currently not used in the field (AFAIK) might be worth including bcftools stats for getting statistics on VCF files from genotyping. This would help for genotyping assessiment when not using MultiVCFAnalyzer (which is only really used in aDNA pathogen work).
It would be a simple process, with input channel being VCFs and run the command
bcftools stats <vcf> > <vcf>.vcfstats
with bcftools.stats being sent to a multiqc channel.
A MultiQC module already exists, so why not?
Is your feature request related to a problem? Please describe.
While currently not used in the field (AFAIK) might be worth including bcftools stats for getting statistics on VCF files from genotyping. This would help for genotyping assessiment when not using MultiVCFAnalyzer (which is only really used in aDNA pathogen work).
It would be a simple process, with input channel being VCFs and run the command
with bcftools.stats being sent to a multiqc channel.
A MultiQC module already exists, so why not?