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Make a few tutorials on how to run for different contexts #466

@jfy133

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@jfy133

This will be useful for future training and new people coming in after posting of the print.

Topics:

  • How to contribute a new module (maybe we can write this along side bowtie2? @apeltzer )
  • How to run for human data (shotgun, snpCapture)
  • How to run for pathogen data (phylogenies, functional stuff)
  • How to run for microbiome work data (off-target profiling, )
  • How to use profiles (and make custom ones that can be shared for publication <- noting inheritance rules)

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