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Add output docs for all non-default modules.  #475

@jfy133

Description

@jfy133

Currently only default MultiQC modules are described, for both GeneralStats and sections.

Modules to be added:

  • bowtie2 [draft drawn]
  • malt <- [draft drawn] column required: % Metagenomic Mapped
  • kraken
  • picard markduplicates [draft drawn] <- column required: duplication rate
  • mtnucratio <- only column name, number of 'mt' mapping reads for each non-mt mapping read
  • sexdeterrmine [draft drawn] <- columns required: Rate X, Rate Y
  • multivcfanalyzer [draft drawn] <- columns required: % Hets

@ZandraFagernas I will send draft images when I've done them.
@TCLamnidis can you please draft something for SexDet, and also a sketch for Zandra

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