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Description of the bug
A user forgot to add NA in the their BAM column, and the TSV file also didn't use quote wrapping. The current input validation only checks ifEmpty() which doesn't seem to work on null() objects.
Steps to reproduce
Make input TSV with empty cell instead of NA.
Should result in
Cannot invoke method isEmpty() on null object
error.
Expected behaviour
The validation check should also die when null() object, and give informative error message.
Additional context
https://stackoverflow.com/questions/25039270/how-to-groovy-ify-a-null-check
Check Documentation
I have checked the following places for your error:
- nf-core/eager FAQ/troubleshooting can be found here
Description of the bug
A user forgot to add
NAin the their BAM column, and the TSV file also didn't use quote wrapping. The current input validation only checksifEmpty()which doesn't seem to work onnull()objects.Steps to reproduce
Make input TSV with empty cell instead of NA.
Should result in
error.
Expected behaviour
The validation check should also die when
null()object, and give informative error message.Additional context
https://stackoverflow.com/questions/25039270/how-to-groovy-ify-a-null-check