During samtools filtering to get unmapped reads. For some reason we have the -n flag which strips the read pair information, whihc makes it difficult to convert back to pairs for e.g. de novo assembly of unmapped reads by nf-core/mag. Should remove the -n flag.
During samtools filtering to get unmapped reads. For some reason we have the
-nflag which strips the read pair information, whihc makes it difficult to convert back to pairs for e.g. de novo assembly of unmapped reads by nf-core/mag. Should remove the-nflag.