Some parameters have been updated or had their names changed with new releases of the pipeline, but test config files have not necessarily been kept up to date with the latest parameter names.
E.g.
|
run_trim_bam = true |
|
bamutils_clip_left = 1 |
|
bamutils_clip_right = 1 |
Where the bam trimming parameters have different names since release
2.4.1
these should be updated to be usable with the latest releases.
Some parameters have been updated or had their names changed with new releases of the pipeline, but test config files have not necessarily been kept up to date with the latest parameter names.
E.g.
eager/conf/benchmarking_human.config
Lines 26 to 28 in 43a239b
Where the bam trimming parameters have different names since release
2.4.1these should be updated to be usable with the latest releases.