List view

Please support paired input to bowtie2.

enhancementNew feature or requestNew feature or request

user-supportFor setup and usage questions and advice rather than code issuesFor setup and usage questions and advice rather than code issues

Status: Closed (completed).

#652 In nf-core/eager;

· by charles-plessy was closed on Jan 12, 2021

Request for adding --qualitymax

easier-tasks

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#682 In nf-core/eager;

· by AleksandraLaura was closed on Mar 12, 2021

Suggestion for input tsv file to cause error when invalid option provided

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#693 In nf-core/eager;

· by alinahiss was closed on Mar 12, 2021

Profile priority in wrong order in doc

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#695 In nf-core/eager;

· by maxibor was closed on Mar 12, 2021

tsv empty column error

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

pendingAddressed on branch waiting for related PRAddressed on branch waiting for related PR

Status: Closed (completed).

#626 In nf-core/eager;

· by scarlhoff was closed on Feb 19, 2021

Pipeline won't work for some clusters due to Java tool parameters

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#672 In nf-core/eager;

· by jfy133 was closed on Mar 10, 2021

MultiQC is ignored on large runs

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#671 In nf-core/eager;

· by jfy133 was closed on Jan 28, 2021

runs fail/stop at qualimap step when bam files are empty

bugSomething isn't workingSomething isn't working

pendingAddressed on branch waiting for related PRAddressed on branch waiting for related PR

Status: Closed (completed).

#668 In nf-core/eager;

· by ashildv was closed on Feb 19, 2021

File name collision when including single stranded and double stranded of same sample

bugSomething isn't workingSomething isn't working

minor

Status: Closed (completed).

#653 In nf-core/eager;

· by aidaanva was closed on Mar 15, 2021

Print nuclear contamination fails (input files not staged)

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#666 In nf-core/eager;

· by IdoBar was closed on Jan 28, 2021

JSON Help + Lib Functions adding

Status: Merged (completed).

nf-core/eagernumber 680

#680 In nf-core/eager;

· by apeltzer was closed on Mar 12, 2021