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nf-core / eager Public

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Fork 88
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DSL2: Add mapAD#1072

Merged

jch-13 merged 18 commits intonf-core:devnf-core/eager:devfrom

jch-13:dsl2-mapadjch-13/eager:dsl2-mapadCopy head branch name to clipboard

Apr 11, 2025

Conversation Commits18 (18)Checks Files changed

Merged

DSL2: Add mapAD#1072
jch-13 merged 18 commits intonf-core:devfrom
jch-13:dsl2-mapad

Commits

Commits on Apr 10, 2025

Add mapAD modules, indexing, and mapping
jch-13
committed
Test mapAD as mapping tool
jch-13
committed
Fix mapAD multiref mapping
jch-13
committed
Bump mapAD version
jch-13
committed
Pass FASTA to BWA mem
jch-13
committed
Use proper names for non-published files
jch-13
committed
Use mapad module instead of subwf fastq_align_mapad
jch-13
committed
Update mapAD version
jch-13
committed
Improve docs
jch-13
committed
Cosmetics
jch-13
committed
Improve schema
jch-13
committed
Allow changing optional parameters with reasonable upstream defaults
jch-13
committed
Streamline parameter names
jch-13
committed
Enable fastq sharding for mapAD
jch-13
committed
Update mapAD module
jch-13
committed
Improve documentation of mapAD options
jch-13
committed

Commits on Apr 11, 2025

Update nextflow_schema.json

jch-13
and
jfy133
authored
Remove else branch that was accidentally duplicated
jch-13
committed

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