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Fixing PMDTools#210

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apeltzer merged 10 commits intonf-core:devfrom
maxibor:dev
Apr 30, 2019
Merged

Fixing PMDTools#210
apeltzer merged 10 commits intonf-core:devfrom
maxibor:dev

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@maxibor
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@maxibor maxibor commented Apr 29, 2019

Fix PMDTools encoding issue from samtools calmd generated files by running through samtools view first

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Make sure your code lints (nf-core lint .).
  • CHANGELOG.md is updated

Learn more about contributing: https://github.com/nf-core/eager/tree/master/.github/CONTRIBUTING.md

@maxibor maxibor requested a review from apeltzer April 29, 2019 16:00
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Minor points... thanks a bunch 👍

Comment thread nextflow.config Outdated
Co-Authored-By: maxibor <maxibor@users.noreply.github.com>
@apeltzer apeltzer merged commit 3f111df into nf-core:dev Apr 30, 2019
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2 participants