Add preserve realign + index by apeltzer · Pull Request #495 · nf-core/eager

apeltzer · 2020-07-08T18:33:14Z

This should fix #444

PR checklist

This comment contains a description of changes (with reason)
If you've fixed a bug or added code that should be tested, add tests!
If necessary, also make a PR on the nf-core/eager branch on the nf-core/test-datasets repo
Ensure the test suite passes (nextflow run . -profile test,docker --paired_end).
Make sure your code lints (nf-core lint .).
Documentation in docs is updated
CHANGELOG.md is updated
README.md is updated

Add preserve realign + index

eaaf98c

apeltzer requested review from aidaanva and jfy133 July 8, 2020 18:33

Small typo

a209987

apeltzer mentioned this pull request Jul 8, 2020

Preserve realigned bam file when using gatk for genotyping #444

Closed

jfy133 requested changes Jul 9, 2020

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Comment thread main.nf

Update main.nf

c5b1198

apeltzer requested a review from jfy133 July 10, 2020 11:07

Fix regex

d423a2c

jfy133 approved these changes Jul 13, 2020

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jfy133 merged commit d4efd15 into dev Jul 13, 2020

jfy133 deleted the fix-indices-gatk branch July 20, 2020 07:08