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Memory requirements #60

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apeltzer merged 1 commit into from
Oct 15, 2018
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Memory requirements #60

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2 changes: 2 additions & 0 deletions docs/usage.md
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Expand Up @@ -57,6 +57,8 @@ The typical command for running the pipeline is as follows:
nextflow run nf-core/eager --reads '*_R{1,2}.fastq.gz' --fasta 'some.fasta' -profile standard,docker
```

> Note, that you might need to use `-profile standard,singularity` if you installed Singularity and don't want to use Docker. Also make sure, that you specify how much memory is available on your machine by using the `--max_cpus`, `--max_memory` options.

This will launch the pipeline with the `docker` configuration profile. See below for more information about profiles.

Note that the pipeline will create the following files in your working directory:
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