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Add Damage rescaling functionality#642

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apeltzer merged 5 commits intonf-core:devfrom
jfy133:damage-scaling
Dec 23, 2020
Merged

Add Damage rescaling functionality#642
apeltzer merged 5 commits intonf-core:devfrom
jfy133:damage-scaling

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@jfy133
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@jfy133 jfy133 commented Dec 22, 2020

This adds mapDamage rescaling to close #583 and address an implied reviewer comment.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/eager branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint .).
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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Hi @jfy133,

It looks like this pull-request is has been made against the jfy133/eager master branch.
The master branch on nf-core repositories should always contain code from the latest release.
Because of this, PRs to master are only allowed if they come from the jfy133/eager dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page.

Thanks again for your contribution!

@jfy133 jfy133 changed the base branch from master to dev December 22, 2020 15:09
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@apeltzer apeltzer left a comment

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LGTM

@apeltzer apeltzer merged commit b760924 into nf-core:dev Dec 23, 2020
jfy133 added a commit that referenced this pull request Dec 24, 2020
[Merge #642 #641 first] New images with updated workflows
@jfy133 jfy133 deleted the damage-scaling branch March 15, 2021 19:11
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Implement mapDamage2 for base rescaling

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