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Added exit code 140#686

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jfy133 merged 1 commit intodevfrom
add-exit-code
Feb 25, 2021
Merged

Added exit code 140#686
jfy133 merged 1 commit intodevfrom
add-exit-code

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@jfy133 jfy133 commented Feb 20, 2021

This PR adds exit code 140 for retry, which for a variety of schedulers (in particular *grid engine related), corresponds to a walltime limit-kill.

e.g.
https://sites.google.com/a/case.edu/hpcc/jobs/slurm-command-overview/exit-code-status
https://users.gridengine.narkive.com/ZyRamWD7/gridengine-users-exit-status-140

Reported by Megan Michel at SHH/EVA/Harvard.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
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  • Make sure your code lints (nf-core lint .).
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  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
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@jfy133 jfy133 requested a review from a team February 20, 2021 05:31
@jfy133 jfy133 merged commit 480f6ac into dev Feb 25, 2021
@jfy133 jfy133 deleted the add-exit-code branch February 25, 2021 11:17
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