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Fix pigz issues #721

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Merged
apeltzer merged 5 commits into from
Apr 9, 2021
Merged

Fix pigz issues #721

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2b9db90
Fix pigz issues
apeltzer Apr 9, 2021
150fbe8
Update CHANGELOG.md
apeltzer Apr 9, 2021
4122f17
Update CHANGELOG.md
apeltzer Apr 9, 2021
7ec7a80
Update environment.yml
apeltzer Apr 9, 2021
60fbe38
Nicer changelog
apeltzer Apr 9, 2021
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -11,6 +11,8 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.

### `Dependencies`

- Removed pinning of tbb, updated PIGZ to V 2.6 to fix rare stall bug when compressing data after AdapterRemoval

### `Deprecated`

## v2.3.3 - 2021-01-06
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3 changes: 1 addition & 2 deletions environment.yml
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Expand Up @@ -30,7 +30,7 @@ dependencies:
- bioconda::pmdtools=0.60
- bioconda::bedtools=2.29.2
- conda-forge::libiconv=1.15
- conda-forge::pigz=2.3.4
- conda-forge::pigz=2.6
- bioconda::sequencetools=1.4.0.6
- bioconda::preseq=2.0.3
- bioconda::fastp=0.20.1
Expand All @@ -49,5 +49,4 @@ dependencies:
- bioconda::eigenstratdatabasetools=1.0.2
- bioconda::mapdamage2=2.2.0
- bioconda::bbmap=38.87
- conda-forge::tbb=2020.2 # temp for bioconda broken bowtie2, remove once patched in bioconda

⚡