Standardize version emission and restore EDAM comments

Author: HReed1

modules/nf-core/smoothxg/main.nf

@@ -13,7 +13,7 @@ process SMOOTHXG {
     output:
     tuple val(meta), path("*smoothxg.gfa"), emit: gfa
     path("*.maf") , optional: true, emit: maf
-    tuple val("${task.process}"), val('smoothxg'), eval("smoothxg --version 2>&1 | cut -f 1 -d '-' | cut -f 2 -d 'v'"), topic: versions, emit: versions_smoothxg
+    tuple val("${task.process}"), val('smoothxg'), eval("smoothxg --version 2>&1 | cut -f 1 -d '-' | cut -f 2 -d 'v'"), topic: versions, emit: versions
 
     when:
     task.ext.when == null || task.ext.when

modules/nf-core/smoothxg/meta.yml

@@ -28,7 +28,7 @@ input:
         description: Variation graph in GFA 1.0 format
         pattern: "*.{gfa}"
         ontologies:
-          - edam: http://edamontology.org/format_3975
+          - edam: http://edamontology.org/format_3975 # GFA 1
 output:
   gfa:
     - - meta:
@@ -41,15 +41,15 @@ output:
           description: Linearized and simplified graph in GFA 1.0 format
           pattern: "*.smoothxg.{gfa}"
           ontologies:
-            - edam: http://edamontology.org/format_3975
+            - edam: http://edamontology.org/format_3975 # GFA 1
   maf:
     - "*.maf":
         type: file
         description: write the multiple sequence alignments (MSAs) in MAF format
           in this file (optional)
         pattern: "*.{maf}"
         ontologies: []
-  versions_smoothxg:
+  versions:
     - - ${task.process}:
           type: string
           description: The name of the process